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Frank Schnütgen, Franziska Ehrmann, Ina Poser, Nina C Hubner, Jens Hansen, Thomas Floss, Ingrid deVries, Wolfgang Wurst, Anthony Hyman, Matthias Mann, Harald von Melchner (2011) "Resources for proteomics in mouse embryonic stem cells." Nature Methods 8 (2), 103-104.
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Nina C Hubner, Alexander W Bird, Jürgen Cox, Bianca Splettstoesser, Peter Bandilla, Ina Poser, Anthony Hyman, Matthias Mann (2010) "Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions." The Journal of Cell Biology 189 (4), 739-54
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Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, and Gibson TJ. (2010) "ELM: the status of teh 2010 eukaryotic linear motif resource." Nucleic Acids Res. 38(Database issue): D167-80
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Gibson TJ (2009) "Cell regulation: determined to signal discrete cooperation." Trends Biochem Sci. 34(10): 471-82
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Elefsinioti A, Ackermann M, Beyer A (2009) "Accounting for redundancy when integrating gene interaction databases." PLoS one 4(10): e7492
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Morais VA, Verstreken P, Roethig A, Smet J, Snellinx A, Vanbrabant M, Haddad D, Frezza C, Mandemakers W, Vogt Weisenhorn V, Van Coster R, Wurst W, Scorrano L, De Strooper B. (2009) "Parkinson's disease mutations in PINK1 result in decreased Complex I activity and deficient synaptic function." EMBO Journal of Molecular Medicine 1(2): 99-111
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Theis M, Slabicki M, Junqueira M, Paszkowski-Rogacz M, Sontheimer J, Kittler R, Heninger AK, Glatter T, Kruusmaa K, Poser I, Hyman AA, Pisabarro MT, Gstaiger M, Aebersold R, Shevchenko A, Buchholz F. (2009) "Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division." EMBO J. 28(10):1453-65
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Di Benedetto B, Wefers B, Wurst W, Kühn R. (2009) "Local knockdown of ERK2 in the adult mouse brain via adeno-associated virus-mediated RNA interference." Mol Biotechnol. 41(3):263-9
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Vermeulen M, Hubner NC, Mann M. (2008) "High confidence determination of specific protein-protein interactions using quantitative mass spectrometry." Current Opinion in Biotechnology 19:1-7
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Schnütgen F, Hansen J, De-Zolt S, Horn C, Lutz M, Floss T, Wurst W, Noppinger PR, von Melchner H. (2008) " Enhanced gene trapping in mouse embryonic stem cells." Nucleic Acids Res. 36(20):e133
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Russell RB, and Gibson TJ (2008) " A careful disorderliness in the proteome: sites for interaction and targets for future therapies" FEBS Lett. 582(8):1271-5
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Collins, F. S., Rossant, J. and Wurst, W. (2007). "A mouse for all reasons." Cell 128(1): 9-13
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Glaser, T., Pollard, S. M., Smith, A. and Brustle, O. (2007). "Tripotential differentiation of adherently expandable neural stem (NS) cells." PLoS ONE 2(3): e298
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Haupt, S., Edenhofer, F., Peitz, M., Leinhaas, A. and Brustle, O. (2007). "Stage-specific conditional mutagenesis in mouse embryonic stem cell-derived neural cells and postmitotic neurons by direct delivery of biologically active Cre recombinase." Stem Cells 25(1): 181-8
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Horn, C., Hansen, J., Schnutgen, F., Seisenberger, C., Floss, T., Irgang, M., De-Zolt, S., Wurst, W., von Melchner, H. and Noppinger, P. R. (2007). "Splinkerette PCR for more efficient characterization of gene trap events." Nat Genet 39(8): 933-4
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Kittler, R., Surendranath, V., Heninger, A. K., Slabicki, M., Theis, M., Putz, G., Franke, K., Caldarelli, A., Grabner, H., Kozak, K., Wagner, J., Rees, E., Korn, B., Frenzel, C., Sachse, C., Sonnichsen, B., Guo, J., Schelter, J., Burchard, J., Linsley, P. S., Jackson, A. L., Habermann, B. and Buchholz, F. (2007). "Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies." Nat Methods 4(4): 337-44
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Konstantinova, I., Nikolova, G., Ohara-Imaizumi, M., Meda, P., Kucera, T., Zarbalis, K., Wurst, W., Nagamatsu, S. and Lammert, E. (2007). "EphA-Ephrin-A-mediated beta cell communication regulates insulin secretion from pancreatic islets." Cell 129(2): 359-70
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Beyer A, Bandyopadhyay S, and Ideker T (2007). "Integrating physical and genetic maps: from genomes to interaction networks." Nat Rev Genet. 8(9): 699-710
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Taussig, M. J., Stoevesandt, O., Borrebaeck, C. A., Bradbury, A. R., Cahill, D., Cambillau, C., de Daruvar, A., Dubel, S., Eichler, J., Frank, R., Gibson, T. J., Gloriam, D., Gold, L., Herberg, F. W., Hermjakob, H., Hoheisel, J. D., Joos, T. O., Kallioniemi, O., Koegl, M., Konthur, Z., Korn, B., Kremmer, E., Krobitsch, S., Landegren, U., van der Maarel, S., McCafferty, J., Muyldermans, S., Nygren, P. A., Palcy, S., Pluckthun, A., Polic, B., Przybylski, M., Saviranta, P., Sawyer, A., Sherman, D. J., Skerra, A., Templin, M., Ueffing, M. and Uhlen, M. (2007). "ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome." Nat Methods 4(1): 13-7
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Trivedi, C. M., Luo, Y., Yin, Z., Zhang, M., Zhu, W., Wang, T., Floss, T., Goettlicher, M., Noppinger, P. R., Wurst, W., Ferrari, V. A., Abrams, C. S., Gruber, P. J. and Epstein, J. A. (2007). "Hdac2 regulates the cardiac hypertrophic response by modulating Gsk3beta activity." Nat Med 13(3): 324-331
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Benzing, C., Segschneider, M., Leinhaas, A., Itskovitz-Eldor, J. and Brustle, O. (2006). "Neural conversion of human embryonic stem cell colonies in the presence of fibroblast growth factor-2." Neuroreport 17(16): 1675-81
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Buchholz, F., Kittler, R., Slabicki, M. and Theis, M. (2006). "Enzymatically prepared RNAi libraries." Nat Methods 3(9): 696-700
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De-Zolt, S., Schnutgen, F., Seisenberger, C., Hansen, J., Hollatz, M., Floss, T., Ruiz, P., Wurst, W. and von Melchner, H. (2006). "High-throughput trapping of secretory pathway genes in mouse embryonic stem cells." Nucleic Acids Res 34(3): e25
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Ding, L. and Buchholz, F. (2006). "RNAi in embryonic stem cells." Stem Cell Rev 2(1): 11-8
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Foster, L. J., de Hoog, C. L., Zhang, Y., Zhang, Y., Xie, X., Mootha, V. K. and Mann, M. (2006). "A mammalian organelle map by protein correlation profiling." Cell 125(1): 187-99
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Galy, B., Holter, S. M., Klopstock, T., Ferring, D., Becker, L., Kaden, S., Wurst, W., Grone, H. J. and Hentze, M. W. (2006). "Iron homeostasis in the brain: complete iron regulatory protein 2 deficiency without symptomatic neurodegeneration in the mouse." Nat Genet 38(9): 967-9
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Goetz, A. K., Scheffler, B., Chen, H. X., Wang, S., Suslov, O., Xiang, H., Brustle, O., Roper, S. N. and Steindler, D. A. (2006). "Temporally restricted substrate interactions direct fate and specification of neural precursors derived from embryonic stem cells." Proc Natl Acad Sci U S A 103(29): 11063-8
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Koch, P., Siemen, H., Biegler, A., Itskovitz-Eldor, J. and Brustle, O. (2006). "Transduction of human embryonic stem cells by ecotropic retroviral vectors." Nucleic Acids Res 34(18): e120
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Lutz, M., Wempe, F., Bahr, I., Zopf, D. and von Melchner, H. (2006). "Proteasomal degradation of the multifunctional regulator YB-1 is mediated by an F-Box protein induced during programmed cell death." FEBS Lett 580(16): 3921-30
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Mann, M. (2006). "Functional and quantitative proteomics using SILAC." Nat Rev Mol Cell Biol 7(12): 952-8
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Nolden, L., Edenhofer, F., Haupt, S., Koch, P., Wunderlich, F. T., Siemen, H. and Brustle, O. (2006). "Site-specific recombination in human embryonic stem cells induced by cell-permeant Cre recombinase." Nat Methods 3(6): 461-7
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Nord, A. S., Chang, P. J., Conklin, B. R., Cox, A. V., Harper, C. A., Hicks, G. G., Huang, C. C., Johns, S. J., Kawamoto, M., Liu, S., Meng, E. C., Morris, J. H., Rossant, J., Ruiz, P., Skarnes, W. C., Soriano, P., Stanford, W. L., Stryke, D., von Melchner, H., Wurst, W., Yamamura, K., Young, S. G., Babbitt, P. C. and Ferrin, T. E. (2006). "The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse." Nucleic Acids Res 34(Database issue): D642-8.
Olsen, J. V., Blagoev, B., Gnad, F., Macek, B., Kumar, C., Mortensen, P. and Mann, M. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Cell 127(3): 635-48
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Plath, N., Ohana, O., Dammermann, B., Errington, M. L., Schmitz, D., Gross, C., Mao, X., Engelsberg, A., Mahlke, C., Welzl, H., Kobalz, U., Stawrakakis, A., Fernandez, E., Waltereit, R., Bick-Sander, A., Therstappen, E., Cooke, S. F., Blanquet, V., Wurst, W., Salmen, B., Bosl, M. R., Lipp, H. P., Grant, S. G., Bliss, T. V., Wolfer, D. P. and Kuhl, D. (2006). "Arc/Arg3.1 is essential for the consolidation of synaptic plasticity and memories." Neuron 52(3): 437-44
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Poet, M., Kornak, U., Schweizer, M., Zdebik, A. A., Scheel, O., Hoelter, S., Wurst, W., Schmitt, A., Fuhrmann, J. C., Planells-Cases, R., Mole, S. E., Hubner, C. A. and Jentsch, T. J. (2006). "Lysosomal storage disease upon disruption of the neuronal chloride transport protein ClC-6." Proc Natl Acad Sci U S A 103(37): 13854-9
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Riedel, C. G., Katis, V. L., Katou, Y., Mori, S., Itoh, T., Helmhart, W., Galova, M., Petronczki, M., Gregan, J., Cetin, B., Mudrak, I., Ogris, E., Mechtler, K., Pelletier, L., Buchholz, F., Shirahige, K. and Nasmyth, K. (2006). "Protein phosphatase 2A protects centromeric sister chromatid cohesion during meiosis I." Nature 441(7089): 53-61
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Sarov, M., Schneider, S., Pozniakovski, A., Roguev, A., Ernst, S., Zhang, Y., Hyman, A. A. and Stewart, A. F. (2006). "A recombineering pipeline for functional genomics applied to Caenorhabditis elegans." Nat Methods 3(10): 839-44
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Schnutgen, F., Stewart, A. F., von Melchner, H. and Anastassiadis, K. (2006). "Engineering embryonic stem cells with recombinase systems." Methods Enzymol 420: 100-36
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Wang, J., Sarov, M., Rientjes, J., Fu, J., Hollak, H., Kranz, H., Xie, W., Stewart, A. F. and Zhang, Y. (2006). "An improved recombineering approach by adding RecA to lambda Red recombination." Mol Biotechnol 32(1): 43-53
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